Energy and fuel pathways · Biochemistry

Metabolism MCQ

Glycolysis and gluconeogenesis, the Krebs cycle and oxidative phosphorylation, amino acid and lipid metabolism, ketone bodies, and the carbohydrate metabolism behind caries. 25 MCQs and 5 INBDE patient cases.

25 practice MCQsQuick-reference tableMnemonics + clinical pearlsFull distractor explanations
High-yield review

Concept summary and clinical relevance.

Quick-reference structure first, then detailed coverage. Mnemonics in amber, clinical pearls in blue.

Metabolism questions on the INBDE reward a map, not memorized trivia: know where each pathway runs, what it yields, and the one enzyme that controls its rate. Then connect it to dentistry, because the same glucose metabolism that fuels your cells is what oral bacteria use to make the acid that causes caries, and the fasting and fed switches explain ketone breath, healing, and the diabetic patient.

The pathways at a glance
PathwayLocationRate-limiting enzymeNet signal / yield
GlycolysisCytoplasmPhosphofructokinase-1 (PFK-1)Glucose to 2 pyruvate, net 2 ATP + 2 NADH
GluconeogenesisLiver (cytoplasm + mitochondria)Fructose-1,6-bisphosphataseMakes new glucose during fasting
Krebs cycleMitochondrial matrixIsocitrate dehydrogenasePer acetyl-CoA: 3 NADH, 1 FADH2, 1 GTP
Oxidative phosphorylationInner mitochondrial membrane(ATP synthase / O2 demand)Most of the cell's ATP
Beta-oxidationMitochondrial matrixCarnitine shuttle (CPT-1)Acetyl-CoA from fatty acids (fasting fuel)
KetogenesisLiver mitochondriaHMG-CoA synthaseKetone bodies when insulin is low

Glycolysis & Gluconeogenesis

  • Glycolysis runs in the cytoplasm of every cell, converting glucose to pyruvate for a net 2 ATP and 2 NADH. PFK-1 is the committed, rate-limiting step.
  • Hexokinase (everywhere, low Km, inhibited by its product G6P) versus glucokinase (liver and pancreas, high Km, not product-inhibited) sets how tissues trap glucose.
  • Without oxygen, pyruvate is reduced to lactate to regenerate NAD+ so glycolysis can continue; the liver recycles that lactate back to glucose (Cori cycle).
  • Gluconeogenesis is essentially glycolysis in reverse in the liver, using four bypass enzymes (pyruvate carboxylase, PEPCK, fructose-1,6-bisphosphatase, glucose-6-phosphatase) to make glucose during fasting.
Clinical pearl, The caries connection
Oral bacteria such as Streptococcus mutans run glycolysis on dietary sugars and excrete lactic acid. When plaque pH drops below the critical level near 5.5, enamel demineralizes. Fluoride works partly by inhibiting bacterial enolase (a glycolytic enzyme), cutting acid output, and partly by forming acid-resistant fluorapatite and driving remineralization. Xylitol cannot be fermented, so it does not feed this pathway.

Krebs Cycle & Oxidative Phosphorylation

  • Pyruvate enters the mitochondrion and is converted to acetyl-CoA by pyruvate dehydrogenase, which needs thiamine (B1) and other B-vitamin cofactors.
  • The Krebs cycle (matrix) oxidizes acetyl-CoA to CO2, capturing energy as NADH and FADH2; isocitrate dehydrogenase is rate-limiting.
  • The electron transport chain (complexes I to IV) pumps protons across the inner membrane; ATP synthase then uses that gradient to make ATP (chemiosmosis). Roughly 2.5 ATP per NADH and 1.5 per FADH2.
  • Cyanide and carbon monoxide block complex IV; oligomycin blocks ATP synthase; uncouplers (such as 2,4-dinitrophenol) dissipate the gradient as heat. All collapse aerobic ATP production.
Mnemonic, ETC poisons
“Cyanide and CO Cut Complex IV.” Both halt oxidative phosphorylation at cytochrome c oxidase, so the cell cannot use oxygen even when it is present.

Amino Acid Metabolism

  • There are nine essential amino acids the body cannot make and must obtain from diet; the rest are synthesized from metabolic intermediates.
  • Transamination (by ALT and AST, using vitamin B6 / pyridoxal phosphate) moves amino groups onto carbon skeletons that feed glycolysis or the Krebs cycle.
  • The liver converts the ammonia from amino acid breakdown into urea (the urea cycle); liver failure lets ammonia rise and impair the brain.
  • Phenylketonuria (PKU) is loss of phenylalanine hydroxylase, so phenylalanine cannot become tyrosine and accumulates; treatment is a low-phenylalanine diet and avoiding aspartame, which contains phenylalanine.
Clinical pearl, PKU and the dental product label
Sugar-free dental and medical products sweetened with aspartame carry a 'Phenylketonurics: contains phenylalanine' warning. For a patient with PKU, choose a non-aspartame alternative (for example, a xylitol-sweetened product). It is a small recognition step with real consequences for that patient.

Lipid Metabolism & Ketone Bodies

  • Fatty acids are broken down by beta-oxidation in the mitochondria after the carnitine shuttle (CPT-1) carries them in; fatty acid synthesis runs separately in the cytoplasm.
  • When insulin is low (fasting, uncontrolled diabetes), the liver turns acetyl-CoA into ketone bodies (acetoacetate, beta-hydroxybutyrate, and acetone) as fuel for the brain and muscle.
  • Excess ketones lower blood pH (ketoacidosis), and volatile acetone gives the breath its fruity smell, classically in diabetic ketoacidosis.
  • Cholesterol synthesis is controlled by HMG-CoA reductase, the enzyme statins inhibit.
Clinical pearl, Fed versus fasting, and why it matters chair-side
Insulin runs the fed state (storage: glycogen and fat synthesis); glucagon runs fasting (glycogen breakdown first, then gluconeogenesis, then ketones). A patient who fasts too long before a procedure, or whose diabetes is uncontrolled, shifts toward ketosis. This is why sensible pre-appointment eating and not over-prolonging a fast matter, especially in diabetic patients.
Core Recall Check

25 board-style MCQs.

Active recall is the highest-yield study method. Pick an answer, check it, and read why every distractor is wrong.

0 of 25 answered · 0 correct
  1. Question 1
    Easy
    Glycolysis takes place in the:
  2. Question 2
    Moderate
    The rate-limiting (committed) enzyme of glycolysis is:
  3. Question 3
    Moderate
    The net ATP yield of glycolysis (per glucose) is:
  4. Question 4
    Moderate
    Under anaerobic conditions, pyruvate is converted to lactate mainly to:
  5. Question 5
    Hard
    Compared with hexokinase, liver glucokinase has:
  6. Question 6
    Moderate
    Gluconeogenesis occurs primarily in the:
  7. Question 7
    Moderate
    Oral bacteria cause caries fundamentally by using which pathway on dietary sugar?
  8. Question 8
    Hard
    Fluoride reduces bacterial acid production partly by inhibiting which glycolytic enzyme?
  9. Question 9
    Easy
    The Krebs (citric acid) cycle takes place in the:
  10. Question 10
    Easy
    Most of the cell's ATP is produced by:
  11. Question 11
    Moderate
    ATP synthase makes ATP by harnessing:
  12. Question 12
    Hard
    Cyanide and carbon monoxide are lethal because they block:
  13. Question 13
    Hard
    A chemical uncoupler (such as 2,4-dinitrophenol) affects mitochondria by:
  14. Question 14
    Moderate
    Roughly how much ATP does each NADH yield through oxidative phosphorylation?
  15. Question 15
    Hard
    Which vitamin-derived cofactor is required by pyruvate dehydrogenase to make acetyl-CoA?
  16. Question 16
    Moderate
    How many amino acids are considered essential (must come from the diet)?
  17. Question 17
    Hard
    Transamination reactions (by ALT and AST) depend on a cofactor derived from:
  18. Question 18
    Moderate
    The body disposes of the ammonia from amino acid breakdown by converting it to urea in the:
  19. Question 19
    Moderate
    Phenylketonuria (PKU) results from a defect in the enzyme that converts:
  20. Question 20
    Moderate
    Beta-oxidation of fatty acids takes place in the:
  21. Question 21
    Moderate
    Ketone bodies are produced by the liver mainly when:
  22. Question 22
    Easy
    The fruity odor on the breath in diabetic ketoacidosis is due to:
  23. Question 23
    Moderate
    Statins lower cholesterol by inhibiting:
  24. Question 24
    Moderate
    In the fed state, the dominant hormone insulin promotes:
  25. Question 25
    Moderate
    During prolonged fasting, the order in which the body draws on fuel is best described as:

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Clinical Reasoning Cases

INBDE patient cases.

5 ADA INBDE-format patient cases on metabolism. Each case is a shared patient box plus linked questions with full distractor explanations.

INBDE Patient Cases
Metabolism INBDE Patient Cases →

5 patient cases · 25 linked questions

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Author
Dr. Isaac Sun, DDS

Founder, KYT Dental Services. These MCQs are reviewed by a practicing clinician and offered as an educational reference for dental students.

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